Detailed information of SNP:
|
SNP ID:
sf1218556774(Gbrowse)
Chromosome: chr12 Position: 18556774 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1232 | 54.14% | 45.86% |
| All Indica | 705 | 29.93% | 70.07% |
| All Japonica | 416 | 88.70% | 11.30% |
| Aus | 59 | 91.53% | 8.47% |
| Indica I | 324 | 30.25% | 69.75% |
| Indica II | 206 | 29.61% | 70.39% |
| Indica Intermediate | 175 | 29.71% | 70.29% |
| Temperate Japonica | 288 | 90.28% | 9.72% |
| Tropical Japonica | 75 | 88.00% | 12.00% |
| Japonica Intermediate | 53 | 81.13% | 18.87% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218556774 | C->T | INTERGENIC | None |