Detailed information of SNP:
|
SNP ID:
sf1218557977(Gbrowse)
Chromosome: chr12 Position: 18557977 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 91.67% | 8.33% |
| All Indica | 798 | 88.22% | 11.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218557977 | T->C | LOC_Os12g30950(LOC_Os12g30950.1) | Synonymous |