Detailed information of SNP:
|
SNP ID:
sf1218561824(Gbrowse)
Chromosome: chr12 Position: 18561824 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 68.62% | 31.38% |
| All Indica | 796 | 55.78% | 44.22% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 47.18% | 52.82% |
| Indica II | 212 | 66.51% | 33.49% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218561824 | A->G | INTERGENIC | None |