Detailed information of SNP:
|
SNP ID:
sf1218563095(Gbrowse)
Chromosome: chr12 Position: 18563095 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 55.16% | 44.84% |
| All Indica | 797 | 55.21% | 44.79% |
| All Japonica | 496 | 60.48% | 39.52% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 47.73% | 52.27% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 209 | 60.29% | 39.71% |
| Temperate Japonica | 334 | 48.80% | 51.20% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218563095 | A->T | INTERGENIC | None |