Detailed information of SNP:
|
SNP ID:
sf1218563625(Gbrowse)
Chromosome: chr12 Position: 18563625 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 69.61% | 30.39% |
| All Indica | 798 | 56.02% | 43.98% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 47.47% | 52.53% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218563625 | G->T | INTERGENIC | None |