Detailed information of SNP:
|
SNP ID:
sf1218565594(Gbrowse)
Chromosome: chr12 Position: 18565594 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 84.92% | 15.08% |
| All Indica | 793 | 80.20% | 19.80% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 75.40% | 24.60% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 208 | 77.88% | 22.12% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218565594 | C->A | INTERGENIC | None |