Detailed information of SNP:
|
SNP ID:
sf1218567063(Gbrowse)
Chromosome: chr12 Position: 18567063 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 72.36% | 27.64% |
| All Indica | 791 | 52.84% | 47.16% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 59.62% | 40.38% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 209 | 55.02% | 44.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218567063 | G->A | LOC_Os12g30970(LOC_Os12g30970.1) | INTRON |