Detailed information of SNP:
|
SNP ID:
sf1218567216(Gbrowse)
Chromosome: chr12 Position: 18567216 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 72.07% | 27.93% |
| All Indica | 788 | 52.03% | 47.97% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 59.24% | 40.76% |
| Indica II | 212 | 37.74% | 62.26% |
| Indica Intermediate | 208 | 53.85% | 46.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218567216 | G->A | LOC_Os12g30970(LOC_Os12g30970.1) | INTRON |