Detailed information of SNP:
|
SNP ID:
sf1218583828(Gbrowse)
Chromosome: chr12 Position: 18583828 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 74.95% | 25.05% |
| All Indica | 775 | 92.77% | 7.23% |
| All Japonica | 486 | 45.27% | 54.73% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 356 | 92.98% | 7.02% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 326 | 56.13% | 43.87% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 66 | 43.94% | 56.06% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218583828 | C->G | INTERGENIC | None |