Detailed information of SNP:
|
SNP ID:
sf1218593557(Gbrowse)
Chromosome: chr12 Position: 18593557 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 97.81% | 2.19% |
| All Indica | 793 | 98.87% | 1.13% |
| All Japonica | 455 | 95.60% | 4.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 97.57% | 2.43% |
| Temperate Japonica | 310 | 94.52% | 5.48% |
| Tropical Japonica | 81 | 98.77% | 1.23% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218593557 | G->A | INTERGENIC | None |