Detailed information of SNP:
|
SNP ID:
sf1218596420(Gbrowse)
Chromosome: chr12 Position: 18596420 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 64.85% | 35.15% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 492 | 13.01% | 86.99% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 331 | 8.46% | 91.54% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218596420 | G->A | INTERGENIC | None |