Detailed information of SNP:
|
SNP ID:
sf1218599964(Gbrowse)
Chromosome: chr12 Position: 18599964 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 69.50% | 30.50% |
| All Indica | 792 | 48.11% | 51.89% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 372 | 56.18% | 43.82% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 207 | 50.72% | 49.28% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218599964 | C->G | INTERGENIC | None |