Detailed information of SNP:
|
SNP ID:
sf1218627155(Gbrowse)
Chromosome: chr12 Position: 18627155 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 82.76% | 17.24% |
| All Indica | 788 | 96.57% | 3.43% |
| All Japonica | 494 | 58.91% | 41.09% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 371 | 96.23% | 3.77% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 332 | 45.48% | 54.52% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218627155 | A->T | LOC_Os12g31040(LOC_Os12g31040.1) | Synonymous |