Detailed information of SNP:
|
SNP ID:
sf1218631020(Gbrowse)
Chromosome: chr12 Position: 18631020 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 98.65% | 1.35% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 486 | 96.91% | 3.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 86.05% | 13.95% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218631020 | C->T | INTERGENIC | None |