Detailed information of SNP:
|
SNP ID:
sf1218632504(Gbrowse)
Chromosome: chr12 Position: 18632504 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 97.22% | 2.78% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 486 | 92.59% | 7.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 87 | 68.97% | 31.03% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218632504 | A->G | LOC_Os12g31050(LOC_Os12g31050.1) | Synonymous |