Detailed information of SNP:
|
SNP ID:
sf1218675969(Gbrowse)
Chromosome: chr12 Position: 18675969 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 55.58% | 44.42% |
| All Indica | 786 | 87.15% | 12.85% |
| All Japonica | 492 | 3.25% | 96.75% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 369 | 95.93% | 4.07% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 205 | 82.93% | 17.07% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 65 | 10.77% | 89.23% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218675969 | C->T | INTERGENIC | None |