Detailed information of SNP:
|
SNP ID:
sf1218676222(Gbrowse)
Chromosome: chr12 Position: 18676222 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 60.01% | 39.99% |
| All Indica | 795 | 31.57% | 68.43% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 25.87% | 74.13% |
| Indica II | 210 | 19.05% | 80.95% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218676222 | T->C | INTERGENIC | None |