Detailed information of SNP:
|
SNP ID:
sf1218676552(Gbrowse)
Chromosome: chr12 Position: 18676552 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 65.40% | 34.60% |
| All Indica | 798 | 73.06% | 26.94% |
| All Japonica | 496 | 58.67% | 41.33% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 76.74% | 23.26% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 334 | 47.01% | 52.99% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218676552 | A->G | INTERGENIC | None |