Detailed information of SNP:
|
SNP ID:
sf1218677708(Gbrowse)
Chromosome: chr12 Position: 18677708 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 60.30% | 39.70% |
| All Indica | 798 | 65.54% | 34.46% |
| All Japonica | 497 | 56.74% | 43.26% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 210 | 54.76% | 45.24% |
| Temperate Japonica | 335 | 45.67% | 54.33% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218677708 | C->A | INTERGENIC | None |