Detailed information of SNP:



SNP ID: sf1218681698(Gbrowse)

Chromosome: chr12

Position: 18681698
Major allele: T

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1419 86.26% 13.74%
All Indica799 99.75% 0.25%
All Japonica497 61.77% 38.23%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 48.36% 51.64%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 76.47% 23.53%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1218681698 A->T INTERGENIC None