Detailed information of SNP:
|
SNP ID:
sf1218695854(Gbrowse)
Chromosome: chr12 Position: 18695854 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 58.19% | 41.81% |
| All Indica | 787 | 30.11% | 69.89% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 370 | 24.32% | 75.68% |
| Indica II | 211 | 20.38% | 79.62% |
| Indica Intermediate | 206 | 50.49% | 49.51% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218695854 | T->C | INTERGENIC | None |