Detailed information of SNP:
|
SNP ID:
sf1218696063(Gbrowse)
Chromosome: chr12 Position: 18696063 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 75.23% | 24.77% |
| All Indica | 794 | 94.84% | 5.16% |
| All Japonica | 495 | 43.43% | 56.57% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 54.03% | 45.97% |
| Tropical Japonica | 92 | 6.52% | 93.48% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218696063 | G->A | INTERGENIC | None |