Detailed information of SNP:
|
SNP ID:
sf1218702950(Gbrowse)
Chromosome: chr12 Position: 18702950 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 95.63% | 4.37% |
| All Indica | 780 | 93.08% | 6.92% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 370 | 94.05% | 5.95% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218702950 | G->A | INTERGENIC | None |