Detailed information of SNP:
|
SNP ID:
sf1218703213(Gbrowse)
Chromosome: chr12 Position: 18703213 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 52.04% | 47.96% |
| All Indica | 786 | 82.19% | 17.81% |
| All Japonica | 494 | 3.64% | 96.36% |
| Aus | 61 | 62.30% | 37.70% |
| Indica I | 371 | 88.41% | 11.59% |
| Indica II | 209 | 75.12% | 24.88% |
| Indica Intermediate | 206 | 78.16% | 21.84% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218703213 | C->T | INTERGENIC | None |