Detailed information of SNP:
|
SNP ID:
sf1218704937(Gbrowse)
Chromosome: chr12 Position: 18704937 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 52.07% | 47.93% |
| All Indica | 789 | 82.38% | 17.62% |
| All Japonica | 495 | 3.23% | 96.77% |
| Aus | 63 | 61.90% | 38.10% |
| Indica I | 372 | 89.25% | 10.75% |
| Indica II | 211 | 73.93% | 26.07% |
| Indica Intermediate | 206 | 78.64% | 21.36% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218704937 | C->A | LOC_Os12g31130(LOC_Os12g31130.1) | INTRON |