Detailed information of SNP:
|
SNP ID:
sf1218731113(Gbrowse)
Chromosome: chr12 Position: 18731113 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.07% | 15.93% |
| All Indica | 799 | 79.35% | 20.65% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218731113 | C->A | LOC_Os12g31160(LOC_Os12g31160.1) | Synonymous |