Detailed information of SNP:
|
SNP ID:
sf1218731519(Gbrowse)
Chromosome: chr12 Position: 18731519 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 60.51% | 39.49% |
| All Indica | 794 | 93.95% | 6.05% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 63 | 85.71% | 14.29% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218731519 | C->A | LOC_Os12g31160(LOC_Os12g31160.1) | Non-Synonymous SNP |