Detailed information of SNP:
|
SNP ID:
sf1218734959(Gbrowse)
Chromosome: chr12 Position: 18734959 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 58.67% | 41.33% |
| All Indica | 788 | 92.01% | 7.99% |
| All Japonica | 495 | 4.65% | 95.35% |
| Aus | 61 | 80.33% | 19.67% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 206 | 83.01% | 16.99% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218734959 | G->A | LOC_Os12g31160(LOC_Os12g31160.1) | Synonymous |