Detailed information of SNP:
|
SNP ID:
sf1218738338(Gbrowse)
Chromosome: chr12 Position: 18738338 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 56.50% | 43.50% |
| All Indica | 788 | 89.09% | 10.91% |
| All Japonica | 495 | 4.65% | 95.35% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 372 | 90.86% | 9.14% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218738338 | C->G | INTERGENIC | None |