Detailed information of SNP:



SNP ID: sf1218741360(Gbrowse)

Chromosome: chr12

Position: 18741360
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1378 56.46% 43.54%
All Indica767 28.03% 71.97%
All Japonica495 99.60% 0.40%
Aus60 61.67% 38.33%
Indica I364 17.03% 82.97%
Indica II209 34.93% 65.07%
Indica Intermediate194 41.24% 58.76%
Temperate Japonica334 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate67 98.51% 1.49%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 47.62% 52.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1218741360 A->T LOC_Os12g31169(LOC_Os12g31169.1) INTRON