Detailed information of SNP:
|
SNP ID:
sf1218741360(Gbrowse)
Chromosome: chr12 Position: 18741360 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 56.46% | 43.54% |
| All Indica | 767 | 28.03% | 71.97% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 60 | 61.67% | 38.33% |
| Indica I | 364 | 17.03% | 82.97% |
| Indica II | 209 | 34.93% | 65.07% |
| Indica Intermediate | 194 | 41.24% | 58.76% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218741360 | A->T | LOC_Os12g31169(LOC_Os12g31169.1) | INTRON |