Detailed information of SNP:
|
SNP ID:
sf1218743668(Gbrowse)
Chromosome: chr12 Position: 18743668 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 79.66% | 20.34% |
| All Indica | 791 | 95.32% | 4.68% |
| All Japonica | 484 | 51.45% | 48.55% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 369 | 97.83% | 2.17% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 322 | 32.61% | 67.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218743668 | G->A | INTERGENIC | None |