Detailed information of SNP:
|
SNP ID:
sf1218767627(Gbrowse)
Chromosome: chr12 Position: 18767627 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 77.82% | 22.18% |
| All Indica | 795 | 95.35% | 4.65% |
| All Japonica | 496 | 49.40% | 50.60% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 334 | 61.38% | 38.62% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218767627 | G->A | INTERGENIC | None |