Detailed information of SNP:
|
SNP ID:
sf1218803790(Gbrowse)
Chromosome: chr12 Position: 18803790 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 70.18% | 29.82% |
| All Indica | 757 | 47.95% | 52.05% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 350 | 36.00% | 64.00% |
| Indica II | 207 | 53.62% | 46.38% |
| Indica Intermediate | 200 | 63.00% | 37.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218803790 | C->A | LOC_Os12g31290(LOC_Os12g31290.1) | INTRON |