Detailed information of SNP:
|
SNP ID:
sf1218813585(Gbrowse)
Chromosome: chr12 Position: 18813585 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 63.70% | 36.30% |
| All Indica | 788 | 37.82% | 62.18% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 367 | 25.89% | 74.11% |
| Indica II | 212 | 41.51% | 58.49% |
| Indica Intermediate | 209 | 55.02% | 44.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218813585 | G->A | INTERGENIC | None |