Detailed information of SNP:
|
SNP ID:
sf1218821112(Gbrowse)
Chromosome: chr12 Position: 18821112 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 60.50% | 39.50% |
| All Indica | 797 | 68.63% | 31.37% |
| All Japonica | 496 | 51.41% | 48.59% |
| Aus | 64 | 20.31% | 79.69% |
| Indica I | 373 | 74.80% | 25.20% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 334 | 39.52% | 60.48% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218821112 | A->G | INTERGENIC | None |