Detailed information of SNP:
|
SNP ID:
sf1218821732(Gbrowse)
Chromosome: chr12 Position: 18821732 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 63.16% | 36.84% |
| All Indica | 798 | 72.43% | 27.57% |
| All Japonica | 497 | 53.12% | 46.88% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 76.80% | 23.20% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 40.90% | 59.10% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218821732 | A->G | INTERGENIC | None |