Detailed information of SNP:
|
SNP ID:
sf1218823672(Gbrowse)
Chromosome: chr12 Position: 18823672 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 59.05% | 40.95% |
| All Indica | 794 | 65.74% | 34.26% |
| All Japonica | 497 | 52.72% | 47.28% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 76.20% | 23.80% |
| Indica II | 211 | 58.29% | 41.71% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 335 | 40.60% | 59.40% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218823672 | A->G | LOC_Os12g31340(LOC_Os12g31340.1) | Synonymous |