Detailed information of SNP:
|
SNP ID:
sf1218834944(Gbrowse)
Chromosome: chr12 Position: 18834944 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.01% | 42.99% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218834944 | G->A | INTERGENIC | None |