Detailed information of SNP:
|
SNP ID:
sf1218837448(Gbrowse)
Chromosome: chr12 Position: 18837448 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 91.10% | 8.90% |
| All Indica | 795 | 88.81% | 11.19% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 372 | 91.40% | 8.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218837448 | C->T | INTERGENIC | None |