Detailed information of SNP:
|
SNP ID:
sf1218839157(Gbrowse)
Chromosome: chr12 Position: 18839157 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 63.73% | 36.27% |
| All Indica | 775 | 37.55% | 62.45% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 25.07% | 74.93% |
| Indica II | 213 | 45.07% | 54.93% |
| Indica Intermediate | 195 | 52.82% | 47.18% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218839157 | C->T | INTERGENIC | None |