Detailed information of SNP:
|
SNP ID:
sf1218845677(Gbrowse)
Chromosome: chr12 Position: 18845677 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 94.00% | 6.00% |
| All Indica | 780 | 92.44% | 7.56% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 361 | 92.24% | 7.76% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218845677 | G->A | INTERGENIC | None |