Detailed information of SNP:
|
SNP ID:
sf1218855186(Gbrowse)
Chromosome: chr12 Position: 18855186 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 84.77% | 15.23% |
| All Indica | 799 | 81.98% | 18.02% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218855186 | T->C | LOC_Os12g31390(LOC_Os12g31390.1) | Non-Synonymous SNP |