Detailed information of SNP:
|
SNP ID:
sf1218855862(Gbrowse)
Chromosome: chr12 Position: 18855862 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 92.72% | 7.28% |
| All Indica | 797 | 93.48% | 6.52% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 64 | 34.38% | 65.62% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218855862 | C->T | INTERGENIC | None |