Detailed information of SNP:
|
SNP ID:
sf1218856578(Gbrowse)
Chromosome: chr12 Position: 18856578 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 84.66% | 15.34% |
| All Indica | 797 | 80.93% | 19.07% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 62 | 19.35% | 80.65% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 211 | 75.36% | 24.64% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218856578 | T->C | INTERGENIC | None |