Detailed information of SNP:
|
SNP ID:
sf1218857266(Gbrowse)
Chromosome: chr12 Position: 18857266 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 97.55% | 2.45% |
| All Indica | 776 | 97.68% | 2.32% |
| All Japonica | 491 | 98.17% | 1.83% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 367 | 100.00% | 0.00% |
| Indica II | 203 | 93.60% | 6.40% |
| Indica Intermediate | 206 | 97.57% | 2.43% |
| Temperate Japonica | 331 | 98.49% | 1.51% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218857266 | T->C | INTERGENIC | None |