Detailed information of SNP:
|
SNP ID:
sf1218871614(Gbrowse)
Chromosome: chr12 Position: 18871614 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1318 | 57.13% | 42.87% |
| All Indica | 708 | 27.40% | 72.60% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 63 | 76.19% | 23.81% |
| Indica I | 334 | 16.17% | 83.83% |
| Indica II | 197 | 33.50% | 66.50% |
| Indica Intermediate | 177 | 41.81% | 58.19% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218871614 | A->G | INTERGENIC | None |