Detailed information of SNP:
|
SNP ID:
sf1218878772(Gbrowse)
Chromosome: chr12 Position: 18878772 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 54.45% | 45.55% |
| All Indica | 796 | 22.86% | 77.14% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 61 | 98.36% | 1.64% |
| Indica I | 375 | 12.00% | 88.00% |
| Indica II | 211 | 23.70% | 76.30% |
| Indica Intermediate | 210 | 41.43% | 58.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218878772 | C->T | INTERGENIC | None |