Detailed information of SNP:
|
SNP ID:
sf1218880802(Gbrowse)
Chromosome: chr12 Position: 18880802 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.62% | 39.38% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 496 | 5.04% | 94.96% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218880802 | A->G | LOC_Os12g31440(LOC_Os12g31440.1) | INTRON |