Detailed information of SNP:
|
SNP ID:
sf1218902687(Gbrowse)
Chromosome: chr12 Position: 18902687 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 69.03% | 30.97% |
| All Indica | 765 | 46.41% | 53.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 352 | 39.77% | 60.23% |
| Indica II | 208 | 46.63% | 53.37% |
| Indica Intermediate | 205 | 57.56% | 42.44% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218902687 | G->C | LOC_Os12g31470(LOC_Os12g31470.1) | Non-Synonymous SNP |