Detailed information of SNP:
|
SNP ID:
sf1218907711(Gbrowse)
Chromosome: chr12 Position: 18907711 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1298 | 63.48% | 36.52% |
| All Indica | 685 | 37.81% | 62.19% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 62 | 50.00% | 50.00% |
| Indica I | 303 | 26.07% | 73.93% |
| Indica II | 188 | 43.09% | 56.91% |
| Indica Intermediate | 194 | 51.03% | 48.97% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218907711 | C->T | INTERGENIC | None |